Freschi 2018
AMR analysis on a phylogenetically representative dataset of 1311 high-quality Pseudomonas aeruginosa genomes
Summary
| Key | Value |
|---|---|
| category | assembly based |
| platform | Illumina |
| open source | false |
| reproducible* | true |
| documented& | false |
* by reproducible, we mean that the software is versioned, has at least one release and is packaged (e.g. with conda)
& by documented, we mean that the protocol describes the exact parameters used in each step, and also includes software versions.
Database
CARD (no version provided)
Protocol
- Step 1
300bp PE illumina reads assembled with the A5-miseq 20140521 pipeline.
- Step 2
Prediction of AMR genes performed using RGI (v3.1.1) with the best hit ARO field used.
Citation
The paper(s) documenting this protocol:
Altmetric stats: