Azarian 2018
Detecting AMR in Streptococcus pneumoniae genomes
Summary
| Key | Value |
|---|---|
| category | read-based |
| platform | illumina |
| open source | true |
| reproducible | false |
| documented | false |
Database
ARG-ANNOT and CARD databases
Protocol
- Step 1
The sample consisted of 301 genomes. Whole-genome sequencing (WGS) data for this sample were obtained from a previous analysis
- Step 2
Antimicrobial resistance (AMR)-associated genes and SNPs were identified with ARIBA using ARG-ANNOT and CARD databases
Citation
The paper(s) documenting this protocol:
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